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project_v2

proyecto git_win

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

proovread

PacBio hybrid error correction through iterative short read consensus

pycoqc

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

pypaswas

Program for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.

pyscaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

qcat

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

qqman

An R package for creating Q-Q and manhattan plots from GWAS results

r_for_biologists

Scripts and data for Plotting in R for Biologists, a video course on YouTube

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

ragtag

Fast reference-guided genome assembly scaffolding

repo_cdsb2022

Esto es una descripción de prueba

sc_workshop_nwu26-27

This is the repository for the statistical analysis in R part of the Software Carpentry workshop taking place and the NWU 25-28 October 2017

scaffold_builder

Combining de novo and reference-guided assembly with Scaffold_builder

scripting_linux_shell

A collection of recipes to start scripting in the linux command line

scrna-seq_notas_curso

seqtk

Toolkit for processing sequences in FASTA/Q formats

shi7

Auto-parameterizing QC Pipeline for Illumina sequencing runs

smartdenovo

Ultra-fast de novo assembler using long noisy reads

sra-tools

SRA Tools

sspace_basic

SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension

stamp

Statistical Analysis of Metagenomic Profiles

synnet-pipeline

Workflow for Building Microsynteny Networks

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

tulip

TULIP - The Uncorrected Long read Itegration Pipeline

wgd

Python package and CLI for whole genome duplication analysis

wgddetector

wtdbg2

A fuzzy Bruijn graph approach to long noisy reads assembly