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roxygen2

Generate R package documentation from inline R comments

rstudio

RStudio is an integrated development environment (IDE) for R

rstudio-keynote

sars-cov-2

This is a mirrored version of the main repository at gitlab. Please submit any issues to the gitlab repository.

sc_spls

Pilot sPLS analysis of joint-profiled AML cells

scater

Clone of the Bioconductor repository for the scater package.

scmt-seq

scnmt-seq

single-cell Nucleosome Methylation Transcription

scnmt_gastrulation

scNMT-seq gastrulation

scnmt_seq_gastrulation

Hackathon Analyses

scnmtseq

utils to summarise cov files from NOMeSeq over genomic regions

scran

An R package for low-level analysis of single-cell RNA-seq data. See https://bioconductor.org/packages/release/bioc/html/scran.html for the release version, or https://bioconductor.org/packages/devel/bioc/html/scran.html for the official development version.

scrnaseq_clustering_comparison

A study to compare methods for clustering of scRNA-seq data

sctranform-performance

Using CellBench Data

sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

shiny-examples

simplesinglecell

Clone of the Bioconductor repository for the simpleSingleCell workflow, see http://bioconductor.org/packages/devel/workflows/html/simpleSingleCell.html for the official development version.

simplesinglecell_book

This is a trial bookdown version of a forked repositry

singlecellexperiment

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

singlecellmultimodal

Single Cell multimodal data scripts for downloading datasets

singlecellthoughts

Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow, see https://ltla.github.io/SingleCellThoughts for the compiled version.

snpassoc

SNPassoc

spartan-examples

Examples for the Spartan HPC cluster.

srda-spls

testgithubactionswithr

the-elements-of-statistical-learning-python-notebooks

A series of Python Jupyter notebooks that help you better understand "The Elements of Statistical Learning" book

timeomics_bioc

travistest

Test repo to test things on Travis CI

umap

Uniform Manifold Approximation and Projection

umap-1

Uniform Manifold Approximation and Projection - R package