This code accompanies the manuscript "Enhancement of brain atlases with laminar coordinate systems: Flatmaps and barrel column annotations" by S. Bolaños-Puchet, A. Teska, et al.

Preprint containing full methods and applications availble on bioRxiv.

Accompanying data available on Zenodo.

To generate depth and orientation fields, please refer to the documentation of the following repositories:

• atlas-direction-vectors
• atlas-placement-hints

Complete workflow to generate flatmaps and perform flatmap-based applications. For more details, please look at the README in flatmap.

Code needed to add barrel cortex annotations to the CCFv3 Allen Atlas at 10 $\mu m$ resolution. For more details, please look at the README in barrel-annotations.

If you use the atlas-enhancement code or method for your research, we ask you to cite:

Bolaños-Puchet S., Teska A., et al. (2024). Enhancement of brain atlases with laminar coordinate systems: Flatmaps and barrel column annotations. bioRxiv. DOI: 10.1101/2023.08.24.554204

This project/research was supported by funding to the Blue Brain Project, a research center of the École polytechnique fédérale de Lausanne (EPFL), from the Swiss government’s ETH Board of the Swiss Federal Institutes of Technology.

Copyright (c) 2020-2024 Blue Brain Project/EPFL.

This work is licensed under the Apache License, Version 2.0.