André Pedersen's Projects
Tensorflow Backend for ONNX
Convert ONNX model graph to Keras model format.
C library for reading virtual slide images
Python bindings to OpenSlide
Optax is a gradient processing and optimization library for JAX.
Painter & SegGPT Series: Vision Foundation Models from BAAI
Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Reimplementation of the PLS-Net architecture used for lung lobe segmentation in CT
Simple package that makes your generator work in background thread
Material from a workshop in the PRESIMAL Autumn Research School 2022
Programming Languages Logos
LaTex Poster for PS-FCN (ECCV 2018)
PyPI downloads analytics dashboard
Simple program which converts the qpdata-names, such that if they are accessible in QuPath-0.1.2, if they were produced in a newer version
A python version of https://github.com/laserpants/qt-material-widgets
An open-source digital pathology based rapid image annotation tool
wrapper for pkgbuild to quickly build simple packages from an installed app, a dmg or zip archive.
QuPath - Bioimage analysis & digital pathology
Simple program that makes it possible to directly run other people's qupath projects, without the need to re-importing all images again.
Automatic segmentation and generation of standardized clinical reports for the most common brain tumors, using MRI volumes
RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]
The source code that powers readthedocs.org