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Program/lib to extract bases from positions in fastafiles.
copied latest version of bgzf faidx and friends from htslib to make work on latest bgzip files from SAMtools
Examples:
- head plink.bim |./refFinder/refFinder pseudohaploid.fa.gz plink full >mytped.tped
- echo "chr7 10010" | ./refFinder/refFinder hg19.fa.gz
Updated Makefile so it would compile on most recent compilers. Updated from travis to actions. Another usefull example of how to run
- echo "chr7:100-150"|./refFinder/refFinder hg19.fa.gz