annaprotasio Goto Github PK

annaprotasio.github.io

My personal website built with R, RStudio and Rmarkdown

cmx.js

[prototype] A library/markup for building xkcd-style comic strips

cut_and_run_douse

Cut and run analysis for C Douse

dnapipete

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

example-rmd-templates

📄 A selection of minimal examples used to highlight R Markdown templates, as referred to in the "R Markdown Definitive Guide"

for_collette

Visit website:

friendly-github-intro

This is a beginner friendly introduction to making open, version-controlled, and collaborative projects using Github.

hello-world

A sandbox repository

intro-machine-learning

marelli_et_al_hiv_vif

Bioinformatic analysis of Vif polymorphisms

merchant_et_al_2020

Supporting material for publication Merchant et al 2020

my_first_repository

This repository contains an example from the reproducibility course

norbert_rnaseq_mar2020

peixoto2015_tutorial

Tutorial to reproduce the analysis of Peixoto et al. (2015)

protasio_et_al_2017_plosntd

Supplementary materials for one of my publication, Protasio et al 2017, published in PloS Neglected Tropical Diseases.

reverse-interview

Questions to ask the company during your interview

sandbox

simple_website

so2

So2 TE Bioinformatic ressources -- Parisot et al. 2020

te_manannot

Accompanying repository for our publications on manual curation methods for Transposable Elements.

te_tools_avp25

Transposable Elements analysis and parsing tools

tescripts

Scripts used in Transposable element annotation