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2019fem_code

Code to plot figures in paper

chiuchao_2014_code

R code for computing functional diversity in the paper Chiu, C.-H. and Chao, A. (2014).

chiuchao_2014_code_old

Previous version of ChiuChao_2014_code

completeness

copia.r

Copia.R: R script for inferring culture diversity based on abundance data

data

dip

Diversity Partition

ecm_inext.beta3d

ECM_iNEXT.beta3D (R code and data for graphics in 2023 ECM paper by Chao et al.)

ele_mf.beta4

ELE_MF.beta4 (R code and data for graphics in 2023 Ecology Letters paper by Chao et al.)

evenness

fund

fund_data

good-turing

inext

R package for interpolation and extrapolation

inext.3d

Interpolation and Extrapolation for three dimensions of biodiversity

inext.4step

Figs in Chao et al., 2020, Quantifying sample completeness and comparing diversities among assemblages

inext.4steps

Four-Step Biodiversity Analysis Based on iNEXT

inext.beta3d

iNterpolation and EXTrapolation with beta diversity for three dimensions of biodiversity

inext.link

INterpolation and EXTrapolation in Network diversity

inextpd

iNterpolation and EXTrapolation for phylogenetic diversity

mee_inext.3d

MEE_iNEXT.3D (R code and data for graphics in MEE 2021 paper by Chao et al.)

mf.beta4

Software for measuring ecosystem multifunctionality and assessing BEF relationships.

minext

Mixed iNEXT

ptb_inext.link

PTB_iNEXT.link (R code and data for graphics in 2023 Philosophical Transactions B paper by Chiu et al.)

salvage-logging_jae

Code for an example in the Georgiev et al. 2020

shared

spader

SpadeR provides simple R functions to compute various biodiversity indices and related (dis)similarity measures based on individual-based (abundance) data or sampling-unit-based (incidence) data taken from one or multiple communities/assemblages.

stringdist

String distance functions for R