Camera server (PointGrey) and arduino based behaviour setup. Everything is automated using cmake. Both arduino and camera must be connected to compute before doing the following.

To download the code from a particular branch

 $ git clone --recursive -b bhumika https://github.com/ananthamurthy/eyeBlinkBehaviour 
 $ cd eyeBlinkBehaviour 
 $ ./bootstap.sh    # To setup your Ubuntu system.

The script bootstap.sh will try to configure your system. You must have sudo permissions. And you must be using Ubuntu since the camera server only compiles on Ubuntu. In case, something odd happens, raise an issue on github.

Once bootstrap is successful, to build and upload to arduino

$ mkdir _build 
$ cd _build
$ cmake -DANIMAL_NAME=k2 -DSESSION_NUM=1 -DSESSION_TYPE=2 ..
$ make run              # to run the whole setup, (arduino and camera both must be connected)or
$ make miniterm         # Just to test arduino board. (camera need to be connected)

Press CTRL+C in terminal to close the session. If just running make miniterm, press CTRL+] to come out of miniterm (scrolling text).

If you need to change the arduino port, pass -DPORT=/path/to/port option to cmake. On a linux system, e.g.

 $ cmake -DPORT=/dev/ttyACM1 -DANIMAL_NAME=k2 -DSESSION_NUM=1 -DSESSION_TYPE=2 ..

Most of them are in source. You need to install the following:

• cmake
• gnuplot-x11
• python-serial
• pip install readchar
• pip install gnuplotlib

• sudo apt install python-tifflib

• Puff : p
• Tone : t
• Led : l
• Select : s
• Reboot : ctrl+c

See function write_data_line in file src/main.ino.

sprintf(msg_  
        , "%lu,%d,%d,%d,%d,%d,%d,%d,%d,%s"
        , timestamp, trial_count_, puff, tone, led
        , motion1, motion2, camera, microscope, trial_state_
        );