The report is in the format of jupyter notebook and due to large file limit on github, the notebook is split into two parts. 
The first notebook, Report_PartI.ipynb covers the first section.
while the second one, Report_PartI.ipynb, covers the remaining parts. 
The default notebook has the marking style, which means most of the simulation parts are commented out and original experiment will not be rerun. 
Instead, generated files are shown. To redo the simulation you need to follow the instruction in the cells.

There are some, however, simple visualization code that needs rendring, which typically takes about average ~10-20s.

Some file path incompatibility might occur during running the code. 
It depends on the platforms that you are using. I developed this on my local vscode.
If something went wrong, please do check the path.

Also note the link above 'open in vscode' might redirect you to a previous version.
There are several broken commits (too large to upload) without LFS.
So it is best not to use it. use https to clone this repo or just 
download it !

Enjoy !

.
├── assets                   # visualization images in notebook 
├── demo                     # videos/image of simulation
├── exec_time                # time for lenia updates iteration
├── flow lenia               # functions for implementing flow lenia 
├── generation data          # array of lenia updates iteration 
├── QCA                      # semi-quantum functions
├── Qdatafiles               # zoo for semi-quantum creature
├── utils                    # main helper functions
├── zoo                      # zoos of lenia creatures
├── Report_PartI             # first part of report
├── Report_PartII            # second part of report
└── README.md