The goal of this project is to reproduce the results presented in [1], namely to accelerate the Gillespie Multiparticle Method [2] using General-Purpose Graphics Processing Units (GPGPU).

1. Matthias Vigelius, Aidan Lane, Bernd Meyer, Accelerating reaction–diffusion simulations with general-purpose graphics processing units, Bioinformatics, Volume 27, Issue 2, 15 January 2011, Pages 288–290, https://doi.org/10.1093/bioinformatics/btq622
2. J. Vidal Rodríguez, Jaap A. Kaandorp, Maciej Dobrzyński, Joke G. Blom, Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli, Bioinformatics, Volume 22, Issue 15, 1 August 2006, Pages 1895–1901, https://doi.org/10.1093/bioinformatics/btl271