arkal / rankboost Goto Github PK
View Code? Open in Web Editor NEWThe scripts that conduct the rank boosting step in the precision immuno pipeline
License: Other
The scripts that conduct the rank boosting step in the precision immuno pipeline
License: Other
T/N is considering T>N as good but it should be the opposite
'ENST1231.1_S123K,ENST1211.1_S143K_K146S' raises error instead of returning S>K+2X+K>S
related to #11
Collapsing IAR range by filtered neoepitopes can lead to duplicate shortened IARs from the same gene but different transcripts
E.G.
>neoepitope_X
MEGAALLKVSVLCIWMS
>neoepitope_Y
MEGAALLKVSVLCIWVQ
If the above IARs only has interesting neoepitopes ending before CIW
, we will see this in the rankboost output
GENE R>K neoepitope_X GAALLKVSVLCIW 0.9 4 2 2 0 4.14 6 2 HLA-B*15:01,HLA-C*03:03
GENE R>K neoepitope_Y GAALLKVSVLCIW 0.9 4 2 2 0 1.51 7 3 HLA-B*15:01,HLA-C*03:03
Obviously, those 2 should be collapsed into one call.
GENE R>K neoepitope_X,neoepitope_Y GAALLKVSVLCIW 0.9 4 2 2 0 ZZZ 6 2 HLA-B*15:01,HLA-C*03:03
% in string formatting has higher precedence than * in multiplication. "%s" % a * 10 = "a" * 10 and not "10a"
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.