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bedpe2tabix

simple R script for converting bedpe format to tabix for visualization in WashU Epigenome Browser

fasta_util

utility functions for working with fasta files (read, write, name to numberID conversion, read function consistent with mrmpi library requirements)

fithichip

Statistically Significant loops from HiChIP data

gender_classifier

Classify sex using images with transfer learning from VGG-Face

hic_data_generator

tensorflow.keras data generator/augmentator for HiC data from HICCUPS looplist

lab_webpage_template

simple django based template for lab/personal webpages

mandy

differential interaction calling for HiChIP/PLACseq data

maps

minhash_clustering

Clustering of protein conserved regions using minHashing (MRMPI code)

mpi_util

utility functions for working with MPI (e.g. gathering/broadcasting string containers)

mrmpi_util

utility functions for mrmpi library

multihiccompare

nadda

Non-Alignment Domain Detection Algorithm for protein sequences

naddar

R package for NADDA using pbdMPI for parallelization

noaa

sequence_alignment

Local/Global sequence alignment for DNA/protein sequences (SW - NW algorihtms with affine gap penalty)

smartr

Stock MARket Trade Recommender

ucsc_genome_browser_file_hosting

I keep the files that need to be web-accessed by UCSC genome browser to be displayed here

union_find

Union-Find algorithm, computation of connected components of a given network

virtual4c

R script for creating vritual 4C plot for a given viewpoint from a bedpe file