MONAI Label is an intelligent open source image labeling and learning tool that enables users to create annotated datasets and build AI annotation models for clinical evaluation.
MONAI Label enables application developers to build labeling apps in a serverless way, where custom labeling apps are exposed as a service through the MONAI Label Server.
cat /proc/driver/nvidia/version # check nvidia driver version
sudo apt install nvidia-utils-510 # install matching nvidia driver
./start.sh init
./start.sh send # Send a test session to orthanc
# See OpenApi server at http://localhost:45681/ and Annotate the data at http://localhost:45681/ohifThen either :
- Use OHIF : Annotate the data in the DICOM server via the MONAI Label server at http://localhost:45681/ohif (https://docs.monai.io/projects/label/en/latest/quickstart.html#deepedit-annotation-using-ohif)
- Use 3DSlicer plugin : (https://docs.monai.io/projects/label/en/latest/quickstart.html#deepedit-annotation-using-ohif)
https://docs.monai.io/projects/label/en/latest/appdeployment.html
MONAI Label aims to allow researchers to build labeling applications in a serverless way.
This means that MONAI Label applications are always ready-to-deploy via MONAI Label server.
https://docs.monai.io/projects/label/en/latest/modules.html
root@b910e22215a2:/opt/monai# monailabel --help
Using PYTHONPATH=/opt:
usage: monailabel [-h] [-v] {start_server,apps,datasets,plugins} ...
positional arguments:
{start_server,apps,datasets,plugins}
sub-command help
start_server Start Application Server
apps list or download sample apps
datasets list or download sample datasets
plugins list or download viewer plugins
optional arguments:
-h, --help show this help message and exit
-v, --version print version/opt/monai# monailabel start_server --help
Using PYTHONPATH=/opt:
usage: monailabel start_server [-h] [-a APP] [-s STUDIES] [-v {DEBUG,INFO,WARNING,ERROR}] [-c CONF CONF] [-i HOST] [-p PORT]
[--uvicorn_app UVICORN_APP] [--ssl_keyfile SSL_KEYFILE] [--ssl_certfile SSL_CERTFILE]
[--ssl_keyfile_password SSL_KEYFILE_PASSWORD] [--ssl_ca_certs SSL_CA_CERTS] [--workers WORKERS]
[--limit_concurrency LIMIT_CONCURRENCY] [--access_log] [-l LOG_CONFIG] [--dryrun]
optional arguments:
-h, --help show this help message and exit
-a APP, --app APP App Directory
-s STUDIES, --studies STUDIES
Studies Directory
-v {DEBUG,INFO,WARNING,ERROR}, --verbose {DEBUG,INFO,WARNING,ERROR}
Log Level
-c CONF CONF, --conf CONF CONF
config for the app. Example: --conf key1 value1 --conf key2 value2
-i HOST, --host HOST Server IP
-p PORT, --port PORT Server Port
--uvicorn_app UVICORN_APP
Uvicorn App (<path>:<app>)
--ssl_keyfile SSL_KEYFILE
SSL key file
--ssl_certfile SSL_CERTFILE
SSL certificate file
--ssl_keyfile_password SSL_KEYFILE_PASSWORD
SSL key file password
--ssl_ca_certs SSL_CA_CERTS
CA certificates file
--workers WORKERS Number of worker processes
--limit_concurrency LIMIT_CONCURRENCY
Max concurrent connections
--access_log Enable access log
-l LOG_CONFIG, --log_config LOG_CONFIG
Logging config
--dryrun Dry run without starting server
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