I got an Intel MKL FATAL ERROR about wgd HOT 4 CLOSED

Hi Bowen,

That's weird, so the analyses all went correctly but then the last step failed? From the looks of it, it's some problem with your python packages. From similar issues (e.g. here), I think you might want to try reinstalling numpy using conda install -f numpy, (or perhaps conda install -f sklearn, just guessing). You might want to retry then on a subset of your gene families (e.g. use 10 random lines from your mcl file instead of the full mcl file) to see if it works.

If that doesn't work, than I would advise you to install wgd in a different environment (e.g. using virtualenv or (mini)conda) with python3.6 (I see you are using python3.7, which I haven't tested yet).

Let me know if that solves your troubles,

Arthur (not a 'Dr.' yet BTW ;)

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Thank you Arthur,
I tried to reinstalled numpy and sklearn, but it still doesn't work. Same error.

I couldn't reinstall the python of this system, but I will try to borrow another machine with different environment. I will follow up after I got it.

Best,
Bowen

from wgd.

Hi Arthur,
I got Python3.6, it works fine now.

Thank you and best wishes!

Bowen

from wgd.

OK, great! I'll have to get a look at possible issues with Python3.7. Thanks!

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