assemblerflow / docker-imgs Goto Github PK

long live flowcraft!

From at least last Thursday I could no longer pull flowcraft images from the docker registry. The error states that there are missing manifests. Other images from the community or official images work fine in any of my setups.

Example

# for f in "${flowcraft[@]}"; do docker pull $f; done
Using default tag: latest
Error response from daemon: manifest for flowcraft/fastqc:latest not found
Using default tag: latest
Error response from daemon: manifest for flowcraft/trimmomatic:latest not found
Using default tag: latest
Error response from daemon: manifest for flowcraft/true_coverage:latest not found
Using default tag: latest
Error response from daemon: manifest for flowcraft/spades:latest not found
Using default tag: latest
Error response from daemon: manifest for flowcraft/bowtie2_samtools:latest not found
Using default tag: latest
Error response from daemon: manifest for flowcraft/pilon:latest not found

Versions

Shifter: 18.03.0
Docker: 18.09.2, build 6247962

I've recently noticed that trimmomatic's image isn't executed properly in MacOS. The image is pulled without any issue and executions starts but it runs extremely slowly, making it impossible to us this image.
So far I haven't experience this odd behaviour with any of the other images we provide. I don't know if this is an issue with our image or with docker for MacOS itself. I need to investigate this further to understand the issue better.

Necessary for kraken2 build-db
Add with apt-get install rsync grsync

• base image
• reads_download
• fastqc
• trimmomatic
• megahit
• metaspades
• skesa
• spades
• pilon
• card_rgi
• mash_patlas
• bowtie2_samtools
• mapping_patlas
• kraken
• remove_host
• midas_species
• chewbbaca
• mlst
• patho_typing
• seq_typing