Comments (2)
cfrioux
commented on May 28, 2024
Hi Choon-Sim,
The metabolic objective can be customized as long as it contains metabolites that belong to the metabolic networks (i.e. from the same database). So you can definitely reduce the cooperation potential by selecting only the vitamins inside. Unfortunately you have to do it manually.
To do so, you have to retrieve the file community_analysis/targets.sbml, modifiy it by removing the compounds you are not interested in, and run the command (m2m mincom for instance) with the -t argument.
The full length results will be stored in a json file.
Let me know if I can help you more
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choon-sim
commented on May 28, 2024
Hi @cfrioux
It is helpful, thank you so much.
Choon
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Related Issues (20)
- Hi
- Hi，I'm trying to run your pipeline but I had an error. Do you have any idea how can I solve this? I'm leaving here the input and outputs.Thank you very much
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