Build error for boost.cmake on Linux about smartpeak HOT 2 CLOSED

dmccloskey commented on May 20, 2024

Build error for boost.cmake on Linux

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Comments (2)

pcolaianni commented on May 20, 2024

rename FindBoost.cmake to Findboost.cmake

Commands used:

mkdir build1
mkdir build2
cd build2
cmake -DUSE_SUPERBUILD=ON -G "Unix Makefiles" ..
make
cd ../build1
cmake -DEIGEN_USE_GPU=OFF -DUSE_SUPERBUILD=OFF -DBOOST_USE_STATIC=OFF -G "Unix Makefiles" -DCMAKE_PREFIX_PATH="/home/pasdom/OpenMS-build/" -DEIGEN3_INCLUDE_DIR=/home/pasdom/SmartPeak2/build2/Dependencies/Source/eigen -DBOOST_ROOT=/home/pasdom/SmartPeak2/build2/Dependencies/Source/boost ..
make

ps: my folder names are hardcoded (ie. pasdom/)

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pcolaianni commented on May 20, 2024

This comment is out of date. The updated instructions can be found in the wiki pages:

Old instructions

I compiled OpenMS and SmartPeak2 on my local machine.
Following the guide from OpenMS, I can confirm it's not necessary to build contrib (tested on Ubuntu 18.04).

Note: It is assumed that code resides in ~/OpenMS and ~/SmartPeak2

cd ~
mkdir OpenMS-build
cd OpenMS-build
cmake -DBOOST_USE_STATIC=OFF -DHAS_XSERVER=OFF -DWITH_GUI=OFF -DENABLE_TUTORIALS=OFF -DENABLE_DOCS=OFF -DGIT_TRACKING=OFF -DENABLE_UPDATE_CHECK=OFF -DCMAKE_BUILD_TYPE=Debug -DPYOPENMS=OFF -DOPENMS_COVERAGE=OFF ~/OpenMS
make -j4 OpenMS

cd ~
mkdir SmartPeak2_build
cd SmartPeak2_build
cmake -DEIGEN_USE_GPU=OFF -DUSE_SUPERBUILD=OFF -DBOOST_USE_STATIC=OFF -G "Unix Makefiles" -DCMAKE_PREFIX_PATH=$HOME/OpenMS-build/ -DCMAKE_BUILD_TYPE=Debug ~/SmartPeak2
make -j4

Some dependencies one might have to install:
sudo apt install qt5-default libboost-dev libeigen3-dev libxerces-c-dev coinor-libcbc-dev libsvm-dev libboost-iostreams-dev libboost-date-time-dev libboost-math-dev libwildmagic-dev libsqlite3-dev libglpk-dev seqan-dev

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