Learning nextflow
through examples. It appears to be a great tool for orchestrating data processing pipelines that can be run via bash
commands on a variety of computing resources.
- channelToString: Takes files from a
Channel.fromPath()
command and generates a string with filenames separated by a space. - collect: Takes a channel of values and collects the content in different processes.
- emitFromParams: Test tat information passed as parameters at runtime can be viewed.
- fromFile: Use a python file as part of the nextflow execution (DSL 1).
- params:
- paramsToPython: Pass parameters to python.
- simplePython: Execute some python code as part of a nextflow process.
- stringToList: Split a string of comma separated values into a list.
- withDocker: Use a docker image for the execution environment.
- data: folder with some sample data.