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nextflow_examples's Introduction

Nextflow tutorials

Learning nextflow through examples. It appears to be a great tool for orchestrating data processing pipelines that can be run via bash commands on a variety of computing resources.

Examples

  • channelToString: Takes files from a Channel.fromPath() command and generates a string with filenames separated by a space.
  • collect: Takes a channel of values and collects the content in different processes.
  • emitFromParams: Test tat information passed as parameters at runtime can be viewed.
  • fromFile: Use a python file as part of the nextflow execution (DSL 1).
  • params:
  • paramsToPython: Pass parameters to python.
  • simplePython: Execute some python code as part of a nextflow process.
  • stringToList: Split a string of comma separated values into a list.
  • withDocker: Use a docker image for the execution environment.

Other files

  • data: folder with some sample data.

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