Comments (2)
This may be related to changes in the Juicer pipeline. If you have figured out the issue, please let us know. Otherwise, we will need to look into this.
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Hi @Lattesnow
Thanks for your query. Please git clone the updated code. I have modified the script "createFitHiCContacts-hic.sh". Please follow the updated README to extract the FitHiC compatible contact files from the input .hic data. Please let us know if it solves the problem. Thank you.
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Related Issues (20)
- TypeError: can only concatenate str (not "int") to str HOT 8
- FitHic crashes HOT 1
- Missing chr1 in output HOT 1
- HiCKRy.py generated extreme bias value HOT 1
- fithic crash HOT 1
- sequencing depth for loops HOT 6
- Fragment length is not consistent with fithic resolution (-r) in tests data HOT 1
- error while running fithic with data generated by hic-pro HOT 8
- Allele chromatin loop
- HiCKRy.py KeyError: '0' HOT 5
- test run AttributeError HOT 1
- how to prepare my `input file`? HOT 2
- list index out of range HOT 2
- Difference between ICE and KR biases. Setting up the bias limits. HOT 5
- Out of 70041 loci 70041 were discarded with biases not in range [0.5 2] HOT 3
- merge_filter reduces significant interactions from 12M to 10k
- fragmentMid HOT 1
- FitHiC2 with replicates
- install problem HOT 6
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