Comments (6)
ay-lab
commented on August 31, 2024
Hi @jiangshan529
Thanks for your query. It seems you have python2 installed in your conda environment. Please create a conda environment with python3 (like python 3.7) and then install fithic. Let me know if you face any issues.
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jiangshan529
commented on August 31, 2024
Hi, I create a new conda environment with python3.7(conda create -n fithic python=3.7). However, the installation still shows such error.
Hi @jiangshan529 Thanks for your query. It seems you have python2 installed in your conda environment. Please create a conda environment with python3 (like python 3.7) and then install fithic. Let me know if you face any issues.
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aryakaul
commented on August 31, 2024
Can you confirm that you've activated the new environment and python v3 is active? (paste the output of python --version)
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jiangshan529
commented on August 31, 2024
Yes, I activate the envrionment with "source activate fithic". When I print python, it shows "Python 3.7.13".
Can you confirm that you've activated the new environment and python v3 is active? (paste the output of
python --version)
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aryakaul
commented on August 31, 2024
can you post a screenshot with the error you get when you run conda install fithic
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jiangshan529
commented on August 31, 2024
Hi, hope you can see the picture through email:
[image: image.png]
[image: image.png]
[image: image.png]
Arya ***@***.***> 于2022年10月15日周六 13:04写道：
… can you post a screenshot with the error you get when you run conda
install fithic
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Related Issues (20)
- TypeError: can only concatenate str (not "int") to str HOT 8
- FitHic crashes HOT 1
- Missing chr1 in output HOT 1
- HiCKRy.py generated extreme bias value HOT 1
- fithic crash HOT 1
- sequencing depth for loops HOT 6
- Fragment length is not consistent with fithic resolution (-r) in tests data HOT 1
- error while running fithic with data generated by hic-pro HOT 8
- Allele chromatin loop
- HiCKRy.py KeyError: '0' HOT 5
- test run AttributeError HOT 1
- how to prepare my `input file`? HOT 2
- list index out of range HOT 2
- Difference between ICE and KR biases. Setting up the bias limits. HOT 5
- Out of 70041 loci 70041 were discarded with biases not in range [0.5 2] HOT 3
- merge_filter reduces significant interactions from 12M to 10k
- Any example of using .hic file as the input? HOT 2
- fragmentMid HOT 1
- FitHiC2 with replicates
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