This repositoy contains various versions of the CHIME model re-written in R / Shiny.
Basic functionality is demonstrated in the demos/ folder.
- basicSIR_demo.R contains a minimum working example of the deterministic chime model
- stochasticSIR_demo.R contains a minimum working example of the chime model where SIR parameters are vectors of parameters
- bayesSEIR_demo.R contains a minimum working example of the Bayesian SEIR model
The repository contains two shiny apps.
- rChime: a replication of the deterministic chime model. No longer developing this, just a proof of concept.
- bayesChime: the bayesian version of the chime model, incorporating a time-lag in data collection and social distancing
This project was developed in R version 3.5.1 (Feather Spray). To install the primary dependencies run source/setup.R
- Implementing the time lag in a more intuitive/elegant way
- Writing an R version of the negative binomial sampler
- Cleaning up the labeling
- Implementing data-driven methods for predicting demand.