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2passtools

Two pass alignment for long reads

30_years_of_apc

Code related to '30 years of APC' review article.

aacon

AACon: A Fast Amino Acid Conservation Calculation Service

adapter_detector

nanopore DRS 5' adapter detection

almostsignificant

A server for maintaining high-throughput sequencing QC data

breast_cancer_over_70

Breast cancer data analysis

colabfold_batch_installer

Automated colabfold installation for UoD HPC Cluster

covid19-ace2-variants

Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infection

d3pendr

Differential 3' end analysis

dexdash

Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.

differr_nanopore_drs

Scripts for identifying sites with differential error rates in mapped nanopore DRS data

drsasp-nod-docker

Docker configuration for NoD

fenr

Fast functional enrichment.

fenr-shiny-example

Example of a Shiny app for fast enrichment package fenr

fm_funpdbe

Scripts for adding functional annotations to FunPDBe

fragsys

intervalstorej

A read-write Java implementation of NCList for efficient lookup of overlapping intervals

ipr2jalview

Reformats InterPro annotations into a Jalview format feature file

jpred4-docker

JPred4 Docker Container - Secondary structure and solvent accessibility prediction for protein sequences

jsu_ank_analysis

This repository contains the main bits of code used in my analysis of the ankyrin protein repeat family

kf_arabidopsis-grna

The scripts bundle included with the manuscript.

lbs-comparison

This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools

mettl16_phylogenetics

pipelines and scripts for phylogenetic association mapping of splicing traits

mg_chromcom

Chromatin compaction

mg_chromcom2

Chromatin compaction 2 (Tanaka)

mg_covidprot_neutrophils

Large-scale proteomics of COVID neutrophils (Chalmers)

mg_earlyreplication

Scripts for de Costa et al. manuscript (Blow)

mg_glycotreg

Glycosyltransferases and glycosidases in Treg activation

mg_kinerr

Simple model for kinetochore-microtubule error correction

mg_nccprot

Nascent Chromatin Capture Proteomics (Alabert)