Comments (2)
Hi
Thanks again for your very valuable comments and contributions to clust. I am trying to keep the documentation as understandable as possible for biologists who don't want to bother understanding the backend details. Therefore, I would rather leave the automatic normalisation section in particular simple. However, I have added this description to the Codes suggested for commonly used datasets section:
Based on these, if your data is recommended to use one of the codes which include the code 3, but the dataset has too many zeros or some negative values, it is recommended to use 31 in the place of 3. For example, if you have a one-colour microarray data with too many zeros or few negative values, use 101 31 4 instead of 101 3 4.
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Thanks, Basel!
from clust.
Related Issues (20)
- Default Y-axis label in plot HOT 2
- MemoryError HOT 1
- ValueError: could not convert string to float HOT 2
- PDF file is missing
- Error using replicates files
- Details about how expression values in replicates are collapsed to one (per condition) value HOT 1
- drastically different results between version 1.8.10 and version 1.12.0 HOT 3
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- Feature Request - Separate image for each cluster
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