Comments (5)
You have the right idea. I'm not sure relative paths would work for the --with-boost
option. Have you tried using the absolute path instead? The directory you point to should be the root directory of the unpacked boost tarball. It should have a boost
subdirectory underneath it containing a bunch of .hpp
files.
I just did some tests (with both ARCS 1.0.0 and the HEAD version) where I was able to compile ARCS by pointing --with-boost
to the unpacked tarball directory for boost_1_61_0, using gcc 4.4.7.
./autogen.sh && ./configure --with-boost=/projects/btl/benv/src/boost_1_61_0 && make -j12
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Thank you very much benvvalk, I should have tried with the absolute path!
from arcs.
So you are able to compile ARCS successfully now? (If so, glad to hear!)
from arcs.
Yes absolutely, ARCS is working perfectly now! :)
from arcs.
Great!
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Related Issues (20)
- Regarding the error info "File contains unpaired reads" HOT 7
- About Running ARCS in default mode HOT 3
- GCC version update HOT 1
- arcs-1.2.2: abyss-fixmate-ssq sometimes segfaults HOT 9
- Short read length question: can the tool accept 250? HOT 2
- arcs-long: tiny PE-pairs are produced HOT 3
- Scaffolding Expectations HOT 12
- Running ARCS and ARKS HOT 2
- Parameters for corrected ONT reads HOT 2
- arcs-make in bin HOT 2
- Add optional dependency of pigz HOT 1
- unrecognized option '--fastq' HOT 3
- fastq formatting barcodes in BX tag HOT 8
- ARKS fails to create any links with a highly repetitive input HOT 4
- Parameters for PacBio HiFi data HOT 3
- Can this software use HiC data, or need to use the sequencing technology mentioned in your paper? HOT 1
- `arcs-tigmint` and `arks-tigmint` struggle with input files outside working directory HOT 3
- Incorrect program call? HOT 6
- `arcs-long`/`arks-long` vs `LINKS`? HOT 2
- Understanding specific scaffolding output HOT 4
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