number of scaffolds == number of contigs about arcs HOT 7 CLOSED

Traceback (most recent call last):
  File "./makeTSVfile.py", line 96, in <module>
    readGraphFile(infile)
  File "./makeTSVfile.py", line 15, in readGraphFile
    with open(infile, 'r') as f:
FileNotFoundError: [Errno 2] No such file or directory: 'hsapiens-8reformat.fa.scaff_s98_c5_l0_d0_e30000_r0.05_original.gv'

cd /lustre/haven/proj/UTHSC0013/tigmint_data/arcs/
./arcs-make arcs draft=rn6_after_tigment reads=bnmale_barcode t=80

10      r1021   r1661   1       100
10      f1661   f1021   1       100
10      r1021   r3226   1       100
10      f3226   f1021   1       100
10      f1025   f1037   1       100
10      r1037   r1025   1       100
10      f103    r1823   1       100
10      f1823   r103    1       100
10      f1057   f959    1       100
10      r959    r1057   1       100
....
....
10      r931    f935    1       100
10      r935    f931    1       100
10      r9495   r9536   1       100
10      f9536   f9495   1       100
10      f953    r955    1       100
10      f955    r953    1       100
10      f981    f989    1       100
10      r989    r981    1       100

$ cut -f 4 rn6_after_tigment_c5_m50-10000_s98_r0.05_e30000_z500.tigpair_checkpoint.tsv |sort |uniq -c |sort -rn |head
  54662 1
    398 2
    208 3
    174 4
    168 6
    168 5
    154 7
    150 8
    140 10
    134 9

$ cut -f 4 rn6_after_tigment_c5_m50-3000_s98_r0.05_e30000_z500.tigpair_checkpoint.tsv |sort |uniq -c |sort -rn |head
  54344 1
    398 2
    208 3
    178 4
    168 6
    164 5
    154 7
    150 8
    146 10
    132 9

@E00247:397:HJ7YLALXX:8:1101:12195:19768_AAACACCAGCGATATA
TATACCACACACACACACCCCACACCATACCACACATATACCGCACAAACACACACCCCCCCCCCCATCCCGCACCGCTATCCCATATGCCCACCCCTGCCCGCCACTCATCCCCCGACCACACTTCA
+
FJJJJFAFFJJFJJ<J<JJJJJJJJJ<JJFFFFJJJFJJFAJ--A7---<FJ-<-7----7---7--77-7-A7------7A-A-77--------)7)))))))-)))7----7))))-))7------
@E00247:397:HJ7YLALXX:8:1101:12195:19768_AAACACCAGCGATATA
ATGTGTGGTATGGTGTGGGGTGTGTGTGTGTGGGATACTCGCAGTATATCGCTGGTGTTGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAGTAAGTGAGAGGTGGTGGGTGGTTGCGG
+
AAFAFJJJJJJJJJJJJJFJJJJJJJJJJJJJA--<A-<-----7<7-AAFA-7F7A---7777-<A-7F<F-7--AAAFFFJF-A7F-F<AA-A-<<JAFJ<AJ<)<-)A))----7--7-7----------77-)77)7-)))7--))7
@E00247:397:HJ7YLALXX:8:1101:2798:21456_AAACACCAGCGATATA
CCCACACACACACACAACACACAACACACACACACACAGGCACATACACACACACAACACACAGACACAACACACACAACACACACATACACCCACCACACACACACACAGCACACACAACACCCCCC
+
JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJFJJJJJ<JJJJJJFJJJFJJFJJJ-77FAJ<FJAJ-A7A7AJAAAF-F<-<F<AJFFFJ)FAF<FFJAJ<F--7<J7<-A--A-A-7--)