Comments (2)
Hi, @dcopetti. There's no need to run ./autogen.sh
. Download the released tarball arcs-1.0.5.tar.gz
from the Releases page https://github.com/bcgsc/arcs/releases. Here's a direct link: https://github.com/bcgsc/arcs/releases/download/v1.0.5/arcs-1.0.5.tar.gz
Extract the tarball and then run…
curl -LO https://github.com/bcgsc/arcs/releases/download/v1.0.5/arcs-1.0.5.tar.gz
tar xf arcs-1.0.5.tar.gz
cd arcs-1.0.5
./configure --prefix=$HOME/opt/arcs && make && make install
PREFIX=$HOME/opt/arcs/bin:$PATH
ARCS --version
Even better is to install ARCS using a package manager such as Homebrew (on macOS or Linux) or Bioconda. See http://www.birollab.ca/software.html
Install Homebrew on macOS: https://brew.sh
Install Homebrew on Linux: https://docs.brew.sh/Homebrew-on-Linux
Then run brew install brewsci/bio/arcs
from arcs.
Bioconda does not currently have a formula for ARCS.
@bcgsc/btl It'd be pretty straight forward to add. If someone would like to gain experience adding a recipe to Bioconda, I can point you in the right direction.
https://github.com/bioconda/bioconda-recipes/tree/master/recipes/arcs
Here's the recipe for ABySS.
https://github.com/bioconda/bioconda-recipes/tree/master/recipes/abyss
from arcs.
Related Issues (20)
- About Running ARCS in default mode HOT 3
- GCC version update HOT 1
- arcs-1.2.2: abyss-fixmate-ssq sometimes segfaults HOT 9
- Short read length question: can the tool accept 250? HOT 2
- arcs-long: tiny PE-pairs are produced HOT 3
- Scaffolding Expectations HOT 12
- Running ARCS and ARKS HOT 2
- Parameters for corrected ONT reads HOT 2
- arcs-make in bin HOT 2
- Add optional dependency of pigz HOT 1
- unrecognized option '--fastq' HOT 3
- fastq formatting barcodes in BX tag HOT 8
- ARKS fails to create any links with a highly repetitive input HOT 4
- Parameters for PacBio HiFi data HOT 3
- Can this software use HiC data, or need to use the sequencing technology mentioned in your paper? HOT 1
- `arcs-tigmint` and `arks-tigmint` struggle with input files outside working directory HOT 3
- Incorrect program call? HOT 6
- `arcs-long`/`arks-long` vs `LINKS`? HOT 2
- Understanding specific scaffolding output HOT 4
- tigmint-make 'missing separator' error HOT 8
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from arcs.