Input data are the nd2 files from Nikon timelapes microscopy. Output data are the image files ('IMGs11.m') that track germination process of each spore(or spore clusters if not correctly separated by the script) and the analysis results (e.g.'results11.m).
Code for analysis of germination curves of either isolated or comparison of separate and touched spores are "germination_curves_diff_streptomyces.m" and "germination_touch_and_isolate"