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abm-in-r

An introductio to Agent-Based Modelling in R

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

automate-paml-codeml

bede.github.io

betaflight

Tests for future betaflight development

bioconda-recipes

Conda recipes for the bioconda channel.

bionode-ncbi

Node.js module for working with the NCBI API (aka e-utils).

bte-binder

A jupyter Binder repository containing documentation and example analyses for Big Tree Explorer (BTE)

circle_plot

Draws circle plot using Python for three-spined stickleback RNA-sequencing data.

claranet4

Python client for Aranet4 CO2 sensors

cmash

Fast and accurate set similarity estimation via containment min hash

cryptocurrency-tools

defoptmwe

diversity-scripts

dnaio

Read and write FASTQ and FASTA efficiently from Python

expresslrs-configurator

Cross platform configuration & build tool for the ExpressLRS radio link

fastani

Fast Whole-Genome Similarity (ANI) Estimation

ffpopsim

FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter is coded efficiently using Fast-Fourier Transforms to speed up recombination operations.

fieldbioinformatics

The ARTIC field bioinformatics pipeline

flanker

Gene-flank analysis tool

hivevo_access

hivwholeseq

Data processing pipeline for HIV next-gen sequencing

homebrew-cbl

Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science

homebrew-science

:microscope: Scientific formulae for the Homebrew package manager

hostile

Accurate host read removal

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

kindel

Indel-aware consensus from aligned BAMs

konstel

Hash-based phonemic sequence identifiers

lambda

the Local Aligner for Massive Biological DatA

latex-thesis-template

The files for the course in LaTeX for Theses at the University of Manchester.