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License: MIT License
Hash-based phonemic sequence identifiers
License: MIT License
Currently using first 4 codons and last 5 of Wuhan-Hu-1 to match spike for translation. Mutations in these codons are uncommon but do exist in GISAID
Allow longer phonemic ID to be generated in case of collision.
Length override option?
e.g. abusa-dolom-lopal
Throw informative exceptions rather than using asserts
Bubble exceptions up to web app UI
sars-cov-2-s.genome
often times out on the web interface, presumably due to the parasail step. Explore optimisation.
For safety, tool currently requires unambiguity in order to generate a hash. Provide option for reference backfill for SARS-CoV-2 given appropriate warnings.
To be named string
?
Current design allows for one hash function per scheme. Removing this limitation would permit MLST-like naming
Per directive output?
Useful for verifying e.g. extracted spike sequence
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