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View Code? Open in Web Editor NEWR functions for fitting latent factor models with internal computation in C/C++
License: BSD 3-Clause "New" or "Revised" License
R functions for fitting latent factor models with internal computation in C/C++
License: BSD 3-Clause "New" or "Revised" License
Hello,
I'm currently studying localized latent factor models and I'm trying to run the code.
I prepared the data according to the manual and tried to run the multicontext function, but an error occurred.
This is my setting and code.
setting = data.frame(
name = 'uvw3-F',
has.u = FALSE,
has.gamma = FALSE,
nFactors = 33,
nLocalFactors = 3,
is.logistic = FALSE
)
ans = run.multicontext(
data.train = data.train, data.test=data.test,
setting = setting,
nSamples = 200,
nBurnIn = 30,
nIter = 30,
out.dir="multi_results/");
max(obs$edge.context) is 11. So, I set the nLocalFactors = 3 and nFactors = 3*11 = 33.
But, The following error occurs
Error in run.multicontext(data.train = data.train, data.test = data.test, :
Please check input parameter 'setting' when calling function run.multicontext: setting$nFactors must = setting$nLocalFactors * max(obs$edge.context).
Am I misunderstanding the setting? I'd appreciate it if you could tell me what the problem is.
Thank you for providing good research and code.
Hi,
Follow the tutorial and I got this error:
Error in .Call("sum_margin", out, A, as.integer(nrow(A)), as.integer(ncol(A)), :
载入表里没有"C"字符名"sum_margin"
I have try my best to find the solution, but failed. Please give me some help, thanks. I run the code on my Mac with R version 3.3.2 .
The tutorial-BST.R gives the following error:
source("src/R/examples/tutorial-BST.R");
Loading required package: lattice
WARNING: You did not specify the following components in factor: gamma
WARNING: You did not specify the following components in param: h0, var_gamma
================= START fit.MCEM =====================================
Initial loglik: CD = -19358.42494, E = NA (0.00 sec)
test loss: 6.148298 (0.007 sec)write a model & summary info on to disk (used 0.003 sec)
Iteration 1
start E-STEP
Error in MCEM_EStep.multicontext.C(factor = factor, obs = obs, feature = feature, :
invalid mode (NULL) to pass to C or Fortran (arg 3)
In addition: Warning messages:
1: You did not specify the following components in factor: gamma
2: You did not specify the following components in param: h0, var_gamma
I am using R version 3.0.1 (2013-05-16) -- "Good Sport" and the C, FORTRAN code compiles without any warning message.
What are the possible reasons for this error? Thanks.
Running src/LDA-RLFM/R/model/examples.R, I got following exception:
(B) Fit a model
dyn.load("c_funcs.so");
source("R/c_funcs.R");
source("R/utils.R");
source("R/model/MCEM_MStep.R");
source("R/model/fit.MCEM.R");set.seed(2);
ans = fit.MCEM(
nIter=5, # Number of EM iterations
nSamples=100, # Number of samples drawn in each E-step: could be a vector of size nIter.
nBurnIn=10, # Number of burn-in draws before take samples for the E-step: could be a vector of size nIter.
factor=data.train$factor, # Initial factor values
obs=data.train$obs, # Observed rating
feature=data.train$feature, # Feature values
param=data.train$param, # Initial parameter values
corpus=data.train$corpus, # The text corpus
try=list(lambda=c(0.5,1,2,4,8), eta=c(0.5, 1, 2, 4)), # Values of lambda and eta that you want to try
out.level=1, # out.level=1: Save the factor & parameter values to out.dir/est.highestCDL and out.dir/est.last
out.dir="/tmp/test/lda-rlfm", # out.level=2: Save the factor & parameter values of each iteration i to out.dir/est.i
out.append=FALSE,
debug=1, # Set to 0 to disable internal sanity checking; Set to 100 for most detailed sanity checking
verbose=1, # Set to 0 to disable console output; Set to 100 to print everything to the console
verbose.M=1, # Verbose setting for the M-step
use.C=TRUE, # Whether to use the C implementation (R implementation does not have full functionalities)
lm=T # Whether to use lm to fit linear regression (otherwise bayesglm will be used, which will be slow)
- );
WARNING: Some terms do not belong to any items in the corpus.
*** caught segfault ***
address 0x0, cause 'unknown'
Traceback:
1: .C("fillInTopicCounts", output$cnt_item_topic, output$cnt_topic_term, output$cnt_topic, output$z_avg, corpus_topic, corpus$item, corpus$term, corpus$weight, as.integer(nItems), as.integer(nrow(corpus)), as.integer(nTopics), as.integer(nTerms), as.integer(nCorpusWeights), as.integer(debug), DUP = FALSE)
2: getTopicCounts(corpus, factor$corpus_topic, nItems, nTopics, size$nTerms)
3: fit.MCEM(nIter = 5, nSamples = 100, nBurnIn = 10, factor = data.train$factor, obs = data.train$obs, feature = data.train$feature, param = data.train$param, corpus = data.train$corpus, try = list(lambda = c(0.5, 1, 2, 4, 8), eta = c(0.5, 1, 2, 4)), out.level = 1, out.dir = "/tmp/test/lda-rlfm", out.append = FALSE, debug = 1, verbose = 1, verbose.M = 1, use.C = TRUE, lm = T)
An irrecoverable exception occurred. R is aborting now ...
Thanks for any help!
Hi,
Following is the output of my make:
R CMD SHLIB src/C/util.c src/C/factor_model_util.c src/C/pagerank.c src/C/hierarchical.c src/C/factor_model_multicontext.c src/C/factor_model_util2.cpp -o lib/c_funcs.so
make[1]: Entering directory /home/Desktop/Latent-Factor-Models-master' make[1]: Nothing to be done for
all'.
make[1]: Leaving directory /home/Desktop/Latent-Factor-Models-master' make: *** No rule to make target
src/arslogistic/arms.c', needed by `arslogistic'. Stop.
Should there be an arms.c somewhere?
Thanks!
ans = fit.bst(obs.train=obs.train, x.obs.train=x.obs.train, x_src=x_src, x_dst=x_dst, x_ctx=x_ctx,out.dir = "/tmp/unit-test/simulated-mtx-uvw-10K", model.name="uvw", nFactors=3, nIter=10);
WARNING: You did not specify the following components in factor: gamma
WARNING: You did not specify the following components in param: h0, var_gamma
================= START fit.MCEM =====================================
Initial loglik: CD = -19358.42494, E = NA (0.01 sec)
Error in data.frame(Method = "MCEM", Iter = iter, nSteps = nSamples, CDlogL = loglik, :
arguments imply differing number of rows: 1, 0
Hi,
Follow the tutorial and I got this issue:
R CMD SHLIB src/C/util.c src/C/factor_model_util.c src/C/pagerank.c src/C/hierarchical.c src/C/factor_model_multicontext.c src/C/factor_model_util2.cpp -o lib/c_funcs.so
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lib/c_funcs.so src/C/util.o src/C/factor_model_util.o src/C/pagerank.o src/C/hierarchical.o src/C/factor_model_multicontext.o src/C/factor_model_util2.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -Wall -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: directory not found for option '-L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[1]: *** [lib/c_funcs.so] Error 1
make: *** [c_funcs] Error 1
Thanks!
I finally got it compiled (thanks to the solutions provided by others), but when I ran it, I got this error:
Error in dyn.load(sprintf("%slib/c_funcs.so", code.dir)) :
unable to load shared object '/Users/patrickng/works/Latent-Factor-Models/lib/c_funcs.so':
dlopen(/Users/patrickng/works/Latent-Factor-Models/lib/c_funcs.so, 6): Symbol not found: _compute_szuBv_c_single_dense
Referenced from: /Users/patrickng/works/Latent-Factor-Models/lib/c_funcs.so
Expected in: flat namespace
I am using R version 3.2.4 on Mac OSX. Wonder if anyone has seen this?
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