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_contributing

Instructions for contributing to Open Biomedical Corpora (READ THIS FIRST!)

structminedatapipeline

Performs entity detection, distant supervision, candidate generation, and produces JSON files for typing systems (PLE, AFET, CoType)

t4ss-event

T4SS event corpus

tankbind

Open source code for TankBind. Galixir Tenchnologies

textlogolayout

[CVPR 2022] Aesthetic Text Logo Synthesis via Content-aware Layout Inferring

thinking-outside-the-framework-3-iupac

Example code for PDX RB Thinking Outside The Framework #3: IUPAC naming.

tokenizer

Fast and customizable text tokenization library with BPE and SentencePiece support

torchani

Accurate Neural Network Potential on PyTorch

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch and TensorFlow 2.0.

trimnet

Code for paper "TrimNet: learning molecular representation from triplet messages for biomedicine "

try_to_eat_tensorflow2_in_30_days

txt2pdf

Text to PDF converter with Unicode support

umls-medline-distant-re

Distantly supervised BERT for bag-level multiple instance learning with UMLS KB and MEDLINE texts (BioNLP 2020).

umls-metamap-aligned

Use MetaMap and UMLS for distant supervision data alignment.

umls2rdf

These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.

uni-fold

usc-distantly-supervised-relation-extraction-system

Distantly Supervised Relation Extraction

usc-ds-relationextraction

Distantly Supervised Relation Extraction

vflp

VirtualFlow for Ligand Preparation

vftools

vfvs

VirtualFlow for Virtual Screening

wikiextractor

A tool for extracting plain text from Wikipedia dumps