Comments (3)
For now until the BEP to extract these from the BEL Specs is written and approved and implemented, I'd recommend that these BEP default namespaces are patch releases and can be expedited - e.g. this Acylation addition would be a 2.1.1 release target.
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Also requested: protein oxidation (GO:0018158)
Might we make a repository that has the namespace as a TSV that we can just make PRs and releases from, independently of BEL version?
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I need to find time to write a BEP to remove these 'default' namespaces from the BEL Specs and indicate that the BELNS or DEF prefix stands for default terms. We also can't just change default namespace terms without giving people the option of managing this 'default' namespace on their own.
I definitely agree putting these default namespaces in the BEL Spec was a mistake. We also don't have all of the other options from the other terminologies (equivalences, hierarchy, synonyms, etc).
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Related Issues (19)
- Relocate BEP repository to https://github.com/openbel organization HOT 1
- Write BEP for equivalentTo relationship
- Write BEP for uptake function HOT 6
- Write BEP for regular expression namespace definitions HOT 1
- Write BEP for gmod() function HOT 1
- Write BEP for special EvidenceType annotation HOT 9
- Compelling example for populationAbundance in complex HOT 2
- Add BEP for numeric annotations HOT 1
- Write BEL Style guide (BEP8)
- Schedule November 2018 BEP Review Meeting HOT 1
- BEP for specification of BEL version
- Write BEP for partOf relationship HOT 4
- BEL v2.1 Release Plan and Release Plan Plan
- BEL v2.1 Release
- How to encode domains in BEL HOT 5
- Update openbel.org website HOT 3
- http://bel.bio/bep is down HOT 1
- Make BEL v2.2 medium post HOT 2
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