beukueb / myflq Goto Github PK

I has one problem when I was used MyFLq on BaseSpace which is Illumina analysis platform.
Analysis was failed and the error message show: "Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2)...etc"
I asked Illumina techsupport before, but they cannot support and trobleshooting this error.

I was used Google Chrome version 57.0.2987.133 (64-bit).

I'm keen to use your pipeline, but when I use the documented docker instructions:
sudo docker pull beukueb/myflq #Only necessary to ensure using latest version
sudo docker run -p 0.0.0.0:80:8000 -i -t --entrypoint webapp beukueb/myflq

I get the following:
cam@lightning:~$ sudo docker run -p 0.0.0.0:80:8000 -i -t --entrypoint webapp beukueb/myflq
spawn python3 manage.py syncdb
Traceback (most recent call last):
File "manage.py", line 10, in
execute_from_command_line(sys.argv)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/core/management/init.py", line 385, in execute_from_command_line
utility.execute()
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/core/management/init.py", line 354, in execute
django.setup()
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/init.py", line 21, in setup
apps.populate(settings.INSTALLED_APPS)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/apps/registry.py", line 85, in populate
app_config = AppConfig.create(entry)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/apps/config.py", line 87, in create
module = import_module(entry)
File "/usr/lib/python3.4/importlib/init.py", line 109, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 2231, in _gcd_import
File "", line 2214, in _find_and_load
File "", line 2201, in _find_and_load_unlocked
ImportError: No module named 'django_extensions'
expect: spawn id exp6 not open
while executing
"expect "Username" { send "admin\r" }"
For administrative use, go to http://localhost/admin
You can log in with user 'admin' and password 'myfl1234admin'
Traceback (most recent call last):
File "manage.py", line 10, in
execute_from_command_line(sys.argv)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/core/management/init.py", line 385, in execute_from_command_line
utility.execute()
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/core/management/init.py", line 354, in execute
django.setup()
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/init.py", line 21, in setup
apps.populate(settings.INSTALLED_APPS)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/apps/registry.py", line 85, in populate
app_config = AppConfig.create(entry)
File "/usr/local/lib/python3.4/dist-packages/Django-1.7-py3.4.egg/django/apps/config.py", line 87, in create
module = import_module(entry)
File "/usr/lib/python3.4/importlib/init.py", line 109, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "", line 2231, in _gcd_import
File "", line 2214, in _find_and_load
File "", line 2201, in _find_and_load_unlocked
ImportError: No module named 'django_extensions'
root@1078afd7685d:/myflq/MyFLsite#