Installing timeout about galaxytools HOT 7 CLOSED

install_repository_dependencies: False
install_resolver_dependencies: True
install_tool_dependencies: False

See here: https://github.com/usegalaxy-eu/usegalaxy-eu-tools/blob/master/imaging.yaml

But I assume its the R dependency. Which conda version are you using?

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Galaxy 20.09
conda 4.10.1

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I assume it is this problem: bioconda/bioconda-recipes#13774

@menegidio-lab two tipps. If Galaxy/nginx times out, this is usually not a problem as the conda installation will still be running and finishing eventually. You could also create the env by hand and pin r-base=4 to speed up the solving process by conda.

Alternatively, we could pin an R version in he upstream mitos package. ping @bernt-matthias

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Lets try bioconda/bioconda-recipes#28746 ..

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Hmm. Even with R>=3 and R>=4 I get incompatibilities?

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Do you have the chance to use docker / singularity?

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solved by bioconda/bioconda-recipes#28746 .. @bgruening issue can be closed

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