bids-apps / brainiak-srm Goto Github PK
View Code? Open in Web Editor NEWThis is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
License: Apache License 2.0
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
License: Apache License 2.0
The app currently ignores input data. Independently of what user specified it downloads examples from dropbox giving always the same result.
The App does not produce anything on stdout even if everything goes well. It's not a big deal, but lack of any output makes it hard to debug.
See https://github.com/BIDS-Apps/example for manadatory fields.
setting --participant_label
to a list of participant ids should limit the analysis to a subset of participants (even on the group level).
in CI when running
#!/bin/bash -eo pipefail
docker run -ti --rm \
-v /tmp/workspace/data/ds005-deriv-light:/bids_dataset \
-v ${HOME}/outputs:/outputs \
bids/${CIRCLE_PROJECT_REPONAME,,} --version
^@^@Traceback (most recent call last):
File "/code/run.py", line 11, in <module>
import nilearn.masking
File "/usr/local/lib/python3.8/dist-packages/nilearn/__init__.py", line 68, in <module>
_check_module_dependencies()
File "/usr/local/lib/python3.8/dist-packages/nilearn/version.py", line 180, in _check_module_dependencies
_import_module_with_version_check(
File "/usr/local/lib/python3.8/dist-packages/nilearn/version.py", line 72, in _import_module_with_version_check
module = __import__(module_name)
File "/usr/local/lib/python3.8/dist-packages/pandas/__init__.py", line 22, in <module>
from pandas.compat import is_numpy_dev as _is_numpy_dev # pyright: ignore # noqa:F401
File "/usr/local/lib/python3.8/dist-packages/pandas/compat/__init__.py", line 18, in <module>
from pandas.compat.numpy import (
File "/usr/local/lib/python3.8/dist-packages/pandas/compat/numpy/__init__.py", line 22, in <module>
raise ImportError(
ImportError: this version of pandas is incompatible with numpy < 1.20.3
your numpy version is 1.19.5.
Please upgrade numpy to >= 1.20.3 to use this pandas version. Module "pandas" could not be found. See https://nilearn.github.io/stable/introduction.html#installation for installation information.
Exited with code exit status 1
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