Comments (6)
This limitation has been removed in 05588df
Please tell me if the new master version works for you.
from cobs.
Yes, this is possible by copying some of the query code.
Will do.
from cobs.
Oh great! Thanks
from cobs.
Hi @bingmann , how about canceling length limit?
from cobs.
What do you mean with cancel?
The score counters can be 16-bit (max 65 Ki query length), or 32-bit (max 3 million query length), 64-bit would also be possible, but expensive memory-wise.
from cobs.
I see, I just figure out that 65535 is the maximum 16bit uint, where you use _mm_add_epi16
for parallelizing k-mer count for 8 documents. So replacing _mm_add_epi16
with _mm_add_epi64
can break the limit, in cost of little more memory usage.
from cobs.
Related Issues (18)
- Images for README.md
- Output of compact_construct extremely large HOT 1
- Error when using make -j4 HOT 3
- Provide the number of k-mers in the query HOT 3
- would it be hard to add k<31 support for .ctx files? HOT 4
- conda package HOT 9
- Steps for compiling COBS on server with old GCC/C++/C compiler
- Fails to compile on Ubuntu 18.04.2 HOT 2
- Support more fasta file extensions HOT 1
- COBS for 600K genomes HOT 3
- amino acid support HOT 3
- Build failing on ubuntu 16.04.5, gcc 5.4.0 HOT 3
- Fails to Compile (Errors during 'make') HOT 3
- Possible false negatives in query HOT 8
- Fail during make -j4 (GCC8 is used) HOT 1
- Failing to build COBS during make
- Build problems
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cobs.