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bingmann avatar bingmann commented on May 30, 2024 1

This limitation has been removed in 05588df

Please tell me if the new master version works for you.

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bingmann avatar bingmann commented on May 30, 2024

Yes, this is possible by copying some of the query code.
Will do.

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graceblackwell avatar graceblackwell commented on May 30, 2024

Oh great! Thanks

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shenwei356 avatar shenwei356 commented on May 30, 2024

Hi @bingmann , how about canceling length limit?

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bingmann avatar bingmann commented on May 30, 2024

What do you mean with cancel?
The score counters can be 16-bit (max 65 Ki query length), or 32-bit (max 3 million query length), 64-bit would also be possible, but expensive memory-wise.

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shenwei356 avatar shenwei356 commented on May 30, 2024

I see, I just figure out that 65535 is the maximum 16bit uint, where you use _mm_add_epi16 for parallelizing k-mer count for 8 documents. So replacing _mm_add_epi16 with _mm_add_epi64 can break the limit, in cost of little more memory usage.

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