Comments (1)
Thanks for the report @lima1 . Now fixed in release and devel. It should propagate in tonight's builds so PureCN should clear up.
Valerie
from variantannotation.
Related Issues (20)
- Can geno() obtain the reference depth and alternate allele separately? HOT 1
- readVcfStack(param=ScanVcfParam()) doesn't work if "which= HOT 1
- readVcfStack(param=ScanVcfParam()) doesn't work if "which=" is not specified.
- Data Representation Efficiency of VCF HOT 1
- `writeVcf` doesn't capture ALT Descriptions properly HOT 4
- predictCoding() and changes in start/stop codons? HOT 5
- Different output on same command and same input file, different library version HOT 3
- locateVariants returns genes from both Forward and Reverse strands in PRECEDEID and FOLLOWID HOT 3
- Files do not exist error HOT 3
- Converting VCF --> data.table HOT 18
- Speed up `readVcf` HOT 16
- Populate INFO column with VariantAnnotation::writeVcf HOT 4
- predictCoding with incorrect predictions HOT 1
- SNPlocs version in vignette needs updating HOT 1
- writeVcf Output Causes IGV Errors from htsjdk HOT 5
- Error message from predictCoding () HOT 1
- backward compatibility of info() function HOT 12
- Unable to load vcf file HOT 7
- readVcf is Slow if ScanVcfParam which Regions is Lengthy HOT 3
- readVcf error: if (NROW(flesh) != flesh_len2) stop("shape of 'skeleton' is not compatible with 'NROW(flesh)'") HOT 6
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