Comments (2)
Hi
Thanks for sharing this pipeline. I use the pipeline in ubuntu 18. It fails because it wants to copy the file that already exists in "T2" folder.
error:
cp: '/data/workdir/subject1-session1/T2/subject1-session1.nii.gz' and '/data/workdir/subject1-session1/T2/subject1-session1.nii.gz' are the same file
log:
/usr/src/structural-pipeline/build/MIRTK/Packages/DrawEM/scripts/tissue-priors.sh subject1-session1 40 non-rigid-v2 4 : failed
/usr/src/structural-pipeline/build/MIRTK/Packages/DrawEM/pipelines/neonatal-pipeline.sh /data/workdir/subject1-session1/T2/subject1-session1.nii.gz 40 -t 4 -c 1 -p 1 -v 1 -atlas non-rigid-v2 : failed
How can I fix this error?
Thanks for your help.
from dhcp-structural-pipeline.
Hi,
I met the same problem as you did. Have you solved it? How can I fix this error?
Look forward to your response. Thank you in advance!
from dhcp-structural-pipeline.
Related Issues (20)
- exporting surface files (*.dscalar.nii or *.shape.gii) to freesurfer format HOT 1
- Tissue probability maps are not correctly copied
- Error with T1w/T2w maps
- Segmentation error (with docker image) HOT 10
- Surface error under docker image
- Error with dhcp-structural-pipeline:fetal in docker
- Native install on Big Sur
- Segmentation error HOT 3
- Installation difficulties HOT 1
- Calculate curvature in the script process-surfaces-hemisphere
- Infant structural T1 data segmentation HOT 1
- mirtk padding failure for tissue labels
- setup.sh Failure HOT 1
- setup.sh failure
- code version for dHCP release 3? HOT 3
- Pipeline outputs
- docker issue apple silicon chips?
- recon-neonatal-cortex error HOT 8
- Surface Reconstruction FAILED, please suggest new parameter values for gaus_curvature and min_width
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