Comments (3)
Run the command as below and check the output
sh -c "$(curl -fsSL ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/install-edirect.sh)"
these are the installation instructions by the entrez direct authors, I just tried on my system and did work
from biostar-handbook.
Hi @ialbert,
After running that line, I got the following output - does it mean it is installed properly now?
gzip: xtract.Linux.gz: unexpected end of file
chmod: cannot access 'xtract.Linux': No such file or directorygzip: rchive.Linux.gz: unexpected end of file
chmod: cannot access 'rchive.Linux': No such file or directoryEntrez Direct has been successfully downloaded and installed.
In order to complete the configuration process, please execute the following:echo "export PATH=/home/user/edirect:${PATH}" >> ${HOME}/.bashrc
or manually edit the PATH variable assignment in your .bashrc file.
Would you like to do that automatically now? [y/N]
from biostar-handbook.
it sounds like the downloads don't quite succeed, some programs did not finish downloading,
it kind of feels like your network does not complete the downloads,
some codes won't work but others will, I would move on, entrez direct is not used all that often
from biostar-handbook.
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from biostar-handbook.