gdsc-transform's People
gdsc-transform's Issues
Looks like the transform is not up on dockerhub?
Getting this error when running the gdsc-transform:
Pulling repository docker.io/biostream/gdsc-transform
docker: Error: image biostream/gdsc-transform:latest not found.
See 'docker run --help'.```
New error! Something about Excel support
Looks like it found the image this time, but errored out with this:
File "/usr/local/lib/python2.7/site-packages/pandas/io/excel.py", line 263, in __init__
raise ImportError(err_msg)
ImportError: Install xlrd >= 0.9.0 for Excel support
l/_decorators.py", line 118, in wrapper
return func(*args, **kwargs)
File "/usr/local/lib/python2.7/site-packages/pandas/io/excel.py", line 230, in read_excel
io = ExcelFile(io, engine=engine)
File "/usr/local/lib/python2.7/site-packages/pandas/io/excel.py", line 263, in __init__
raise ImportError(err_msg)
ImportError: Install xlrd >= 0.9.0 for Excel support```
Use conversion table to change drug names to pubchem
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