(immucan-roi) immucan@IMLS-11J80-M01 ~ % immucan-roi
2022-01-27 16:30:01.694 python[8669:109218] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:01.694 python[8669:109218] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7fc9935a41a0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:01.696 python[8669:109218] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:01.696 python[8669:109218] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7fc9935a41a0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:02.473 python[8669:109218] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:02.473 python[8669:109218] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7fc9935a41a0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
Traceback (most recent call last):
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/bin/immucan-roi", line 8, in <module>
sys.exit(main())
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/immucan_roi/__main__.py", line 21, in main
app.exec_dialog()
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/_napping_application.py", line 80, in exec_dialog
dialog = self._create_dialog()
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/immucan_roi/_immucan_napping_application.py", line 49, in _create_dialog
for source_img_file in dialog.source_img_path.iterdir():
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/pathlib.py", line 1160, in iterdir
for name in self._accessor.listdir(self):
FileNotFoundError: [Errno 2] No such file or directory: '/Volumes/immucan_volume/czi'
(immucan-roi) immucan@IMLS-11J80-M01 ~ % immucan-roi
2022-01-27 16:30:09.482 python[8678:109787] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:09.482 python[8678:109787] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7f8517d91cd0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:09.483 python[8678:109787] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:09.483 python[8678:109787] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7f8517d91cd0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:10.745 python[8678:109787] -[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
2022-01-27 16:30:10.745 python[8678:109787] Exception calling directoryDidChange: on delegate <QNSOpenSavePanelDelegate: 0x7f8517d91cd0> exception=-[NSNull length]: unrecognized selector sent to instance 0x7fff88aec000
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/_vispy/layers/image.py:242: UserWarning: data shape (33089, 38573) exceeds GL_MAX_TEXTURE_SIZE 16384 in at least one axis and will be downsampled. Rendering is currently in 2D mode.
warnings.warn(
Traceback (most recent call last):
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 1774, in create_block_manager_from_arrays
mgr = BlockManager(blocks, axes)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 914, in __init__
self._verify_integrity()
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 921, in _verify_integrity
raise construction_error(tot_items, block.shape[1:], self.axes)
ValueError: Shape of passed values is (999, 1), indices imply (0, 1)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/bin/immucan-roi", line 8, in <module>
sys.exit(main())
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/immucan_roi/__main__.py", line 21, in main
app.exec_dialog()
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/_napping_application.py", line 133, in exec_dialog
self.exec(app=app)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/_napping_application.py", line 40, in exec
self._current_source_viewer = self._create_source_viewer(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/immucan_roi/_immucan_napping_application.py", line 59, in _create_source_viewer
source_viewer = super(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/_napping_application.py", line 234, in _create_source_viewer
return NappingViewer(img_file)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/qt/_napping_viewer.py", line 39, in __init__
self._points_layer = self._create_points_layer()
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napping/qt/_napping_viewer.py", line 76, in _create_points_layer
points_layer = self._viewer.add_points(**self._POINTS_LAYER_ARGS)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/components/viewer_model.py", line 4, in add_points
import itertools
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/layers/points/points.py", line 352, in __init__
self._feature_table = _FeatureTable.from_layer(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/layers/utils/layer_utils.py", line 882, in from_layer
features = _features_from_properties(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/layers/utils/layer_utils.py", line 941, in _features_from_properties
return _validate_features(properties, num_data=num_data)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/napari/layers/utils/layer_utils.py", line 916, in _validate_features
return pd.DataFrame(data=features, index=index)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/frame.py", line 614, in __init__
mgr = dict_to_mgr(data, index, columns, dtype=dtype, copy=copy, typ=manager)
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/construction.py", line 464, in dict_to_mgr
return arrays_to_mgr(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/construction.py", line 135, in arrays_to_mgr
return create_block_manager_from_arrays(
File "/Users/immucan/opt/anaconda3/envs/immucan-roi/lib/python3.9/site-packages/pandas/core/internals/managers.py", line 1776, in create_block_manager_from_arrays
raise construction_error(len(arrays), arrays[0].shape, axes, e)
ValueError: Shape of passed values is (999, 1), indices imply (0, 1)