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Scripts/tools for galaxy.

R 0.06% Shell 0.05% Python 93.65% JavaScript 0.90% Common Workflow Language 1.10% Java 0.01% Makefile 0.04% CSS 0.23% TeX 0.01% Lua 0.03% C 1.80% C++ 0.19% Objective-C 0.09% XSLT 0.51% Smarty 0.03% HTML 0.83% Jupyter Notebook 0.47%

galaxy-metabolomics's Introduction

Metabolomics Galaxy Tools

Folders

  • /planemo-pw is a project dir for for pathway analysis. Mostly under construction.
  • /planemo-de for normalization + differential abundance analysis. metab-de.R and metab-de.xml.
  • /scripts for scratch work.
  • /data-<something> folders for test data sets.

Setup (Generic)

# env setup
python3 -m venv xenv
source xenv/bin/activate

pip3 install planemo

# deactivate env
deactivate

galaxy-metabolomics's People

Contributors

metabolomicsaustralia-bioinformatics avatar slugger70 avatar

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