Comments (3)
Was out and didn't see this until now. Thanks @haydenm!
from catch.
Thank you for the very helpful example to reproduce the issue. I'm assuming that you accidentally flipped the input/output fasta files in the command you provide. It appears this is indeed a bug. It would occur when the fragment length is longer than the sequence length but shorter than twice the sequence length. That is the case in your example (i.e., 6000 < 10000 < 2*6000).
I created PR #38 to fix this bug. Can you let me know if the simple fix in that PR resolves your issue?
from catch.
I'm closing this as it has been inactive for a month and PR #38 should resolve the issue.
from catch.
Related Issues (16)
- Incorrect fasta paths for some genomes in directories HOT 1
- Error running design.py HOT 2
- Cluster input sequences by producing signatures of them HOT 1
- Having trouble accessing preloaded datasets HOT 12
- Replicability Zika probes Metsky et al Nature Biotechnology HOT 3
- Issue running design.py on large files HOT 3
- clarification of -e and -m flag function HOT 2
- Update of dataset all viruses HOT 1
- identify conserved regions or regions suitable for differential identification, and design PCR primer HOT 2
- catch on large input HOT 4
- Error when running design.py example HOT 2
- Error using design.py HOT 2
- CATCH fails on macOS starting with Python 3.8
- Error running design.py: unexpected keyword argument 'avoided_genomes' HOT 3
- Problem install Catch HOT 2
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from catch.