This repository contains the functionality to standardize data from the LifeWatch GPS tracking network for large birds so these can be published on Movebank.
| Title | System | Started | Ended | Movebank | Zenodo |
|---|---|---|---|---|---|
| BOP_RODENT - Rodent specialized birds of prey (Circus, Asio, Buteo) in Flanders (Belgium) | Ornitela | 2020 | active | 1278021460 | DOI |
| CURLEW_VLAANDEREN - Eurasian curlews (Numenius arquata, Scolopacidae) breeding in Flanders (Belgium) | Ornitela | 2020 | active | 1841091905 | DOI |
| DELTATRACK - Herring gulls (Larus argentatus, Laridae) and Lesser black-backed gulls (Larus fuscus, Laridae) breeding at Neeltje Jans (Netherlands) | Ornitela | 2020 | active | 1258895879 | |
| H_GRONINGEN - Western marsh harriers (Circus aeruginosus, Accipitridae) breeding in Groningen (the Netherlands) | UvA-BiTS | 2012 | 2018 | 922263102 | DOI |
| HG_OOSTENDE - Herring gulls (Larus argentatus, Laridae) breeding at the southern North Sea coast (Belgium) | UvA-BiTS | 2013 | active | 986040562 | DOI |
| LBBG_JUVENILE - Juvenile lesser black-backed gulls (Larus fuscus, Laridae) hatched in Zeebrugge (Belgium) | Ornitela | 2020 | active | 1259686571 | DOI |
| LBBG_ZEEBRUGGE - Lesser black-backed gulls (Larus fuscus, Laridae) breeding at the southern North Sea coast (Belgium and the Netherlands) | UvA-BiTS | 2013 | active | 985143423 | DOI |
| MEDGULL_ANTWERPEN - Mediterranean gulls (Ichthyaetus melanocephalus, Laridae) breeding near Antwerp (Belgium) | Ornitela | 2021 | active | 1609400843 | |
| MH_ANTWERPEN - Western marsh harriers (Circus aeruginosus, Accipitridae) breeding near Antwerp (Belgium) | UvA-BiTS | 2018 | active | 938783961 | DOI |
| MH_WATERLAND - Western marsh harriers (Circus aeruginosus, Accipitridae) breeding near the Belgium-Netherlands border | UvA-BiTS | 2013 | 2018 | 604806671 | DOI |
| O_AMELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Ameland (the Netherlands) | UvA-BiTS | 2010 | 2013 | 1605803389 | DOI |
| O_ASSEN - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding in Assen (the Netherlands) | UvA-BiTS | 2018 | 2019 | 1605797471 | DOI |
| O_BALGZAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) wintering on Balgzand (the Netherlands) | UvA-BiTS | 2010 | 2014 | 1605798640 | DOI |
| O_SCHIERMONNIKOOG - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding on Schiermonnikoog (the Netherlands) | UvA-BiTS | 2008 | 2014 | 1605799506 | DOI |
| O_VLIELAND - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding and wintering on Vlieland (the Netherlands) | UvA-BiTS | 2016 | 2021 | 1605802367 | DOI |
| O_WESTERSCHELDE - Eurasian oystercatchers (Haematopus ostralegus, Haematopodidae) breeding in East Flanders (Belgium) | UvA-BiTS | 2018 | active | 1099562810 | DOI |
Steps to upload data to Zenodo are described here.
| Title | Remark | GBIF |
|---|---|---|
| Bird tracking - GPS tracking of Lesser Black-backed Gulls and Herring Gulls breeding at the southern North Sea coast | Subset of HG_OOSTENDE and LBBG_ZEEBRUGGE, described in Stienen et al. 2016 |
DOI |
| Bird tracking - GPS tracking of Western Marsh Harriers breeding near the Belgium-Netherlands border | Subset of MH_WATERLAND |
DOI |
- Prepare Uva-BiTS data for Movebank upload
- Prepare Ornitela data for Movebank upload
- Prepare Movebank data for Zenodo upload (make frictionless)
The repository structure is based on Cookiecutter Data Science. Files and directories indicated with GENERATED should not be edited manually, those with IGNORED are ignored by git and will not appear on GitHub, and those with DEPRECATED are no longer maintained.
├── README.md : Description of this repository
├── LICENSE : Repository license
├── bird-tracking.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── cartodb : Documentation for gps tracking data on CartoDB, see
| https://inbo.carto.com/u/lifewatch/ DEPRECATED
|
├── explorer : Source code for an online exploratory tool, see
| https://oscibio.inbo.be/blog/bird-tracking-explorer/ DEPRECATED
|
├── src
│ ├── functions : Custom functions used in scripts
│ ├── movebank_ornitela.Rmd : Script to prepare Uva-BiTS data for Movebank upload
│ ├── movebank_uvabits.Rmd : Script to prepare Ornitela data for Movebank upload
│ ├── movebank_frictionless.Rmd : Script to prepare Movebank data for Zenodo upload (make frictionless)
│ └── outliers.Rmd : Script to mark outliers based on high speeds
│
├── sql
│ ├── movebank_ref.sql: Query to get reference data in Movebank format
│ ├── movebank_gps.sql: Query to get gps data in Movebank format
│ └── movebank_acc.sql: Query to get acceleration data in Movebank format
│
└── data
└── processed : Data that can be uploaded to Movebank GENERATED, large files IGNORED
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