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License: MIT License
Tools to submit impute2 jobs to a grid system (HPC cluster) and to extract genotypes.
License: MIT License
Remove hard-coded imputation reference panel locations, allow the user to specify them via an argument (this applies to submit_impute2_jobs).
Add an option to parse a text file provided by the user. Maybe also move the data structure that defines the chromosomal chunks to a submodule. This could have a method to read from a text file.
Move from hardcoded "bsub" commands to a user-specified submission command. This will accommodate other systems such as those that use "qsub".
Binary search the chunk instead of iterating through all of the lines. Start in the middle of the chunk, compare the coordinates, and move to either quartile. Repeat until a match is found or carp and return empty.
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