btalamantesbecerra / omicr Goto Github PK
View Code? Open in Web Editor NEWomicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
License: Apache License 2.0