R. Burke Squires's Projects
**PLEASE NOTE: Due to lack of funding Leaf LIMS is no longer being developed/updated**. Set up Leaf LIMS on your own system.
📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.
Resources for budding developers
Linux kernel source tree
A simple Python data-structure visualization tool for lists of lists, lists, dictionaries; primarily for use in Jupyter notebooks / presentations
An application supporting reskilling and upskilling for both organisations and individuals
Tools to set up a quick macOS VM in QEMU, accelerated by KVM.
Git-backed Evernote replacement
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
a Python 3 command-line tool to maintain a DB mirror of MEDLINE (https://pypi.python.org/pypi/medic) - ALERT: As I have moved out of science and am working as a consultant now, this project might need a new maintainer once PubMed changes its XML format. Heroes?
Various scripts and recipes for working with nanopore data
Open an IPython notebook in the best available server
A variety of NCBI Computational Tools Distributed as Jupyter Notebooks
Jupyter notebooks to more effectively leverage computational resources at NCBI.
For PyCon, PyData, ODSC, and beyond!
Next generation sequencing pipeline python notebook
NLM Reproducibility Workshop, Rockville, MD - May 15-17, 2019
NLM Reproducibility Workshop, NIH Sept 24-26, 2018
Simple proxy for leveraging ffmpeg to convert any source URL into MPEG-TS over HTTP
Norovirus variability isolation year versus residue difference computation
My personal and public notes.
Cross platform tag based file management software.
Data and project organization for Reproducible Research with the Jupyter notebook curriculum
The file management automation tool.
Script to download all your PacktPub ebooks and videos
Script for ordering and downloading ebooks from packtpub freelearning page
Practice your pandas skills!
Graphical models for Python, implemented in Cython for speed.