Giter VIP home page Giter VIP logo

cactusspine / stargazer Goto Github PK

View Code? Open in Web Editor NEW

This project forked from astrazeneca/stargazer

0.0 1.0 0.0 7.58 MB

StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a novel target prioritization scoring system in an interactive Python-based Streamlit dashboard. StarGazer displays target prioritization scores for genes associated with 1844 phenotypic traits.

License: Apache License 2.0

Python 100.00%

stargazer's Introduction

StarGazer

Maturity level-Prototype

StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a novel target prioritization scoring system in an interactive Python-based Streamlit dashboard. StarGazer displays target prioritization scores for genes associated with 1844 phenotypic traits, from type II diabetes and chronic hepatitis B, to hypertension and IgE levels.

Target prioritization is essential for drug discovery and repositioning. Applying computational methods to analyze and process multi-omics data in order to find new drug targets is a practical approach for achieving this. Despite an increasing number of methods for generating datasets such as genomics, phenomics, and proteomics, attempts to integrate and mine such datasets remain limited in scope. We believe that integrating different data sources using a singular numerical scoring system could help to bridge these different omics layers and facilitate rapid drug target prioritization for studies in drug discovery, development or repositioning.

How to run StarGazer

  • This guide is for Windows. Please cater these instructions to your OS
  • Python 3.9.7 was used for building StarGazer
  1. Download this repository and unzip the folder to your desired location
  • Do not move any of the individual items from this folder
  • (Optional) Create a virtual environment at this stage
  1. Open the command line and change the working directory to this folder. This may require using a command that looks like this:
cd C:\Users\personal\Downloads\StarGazer
  1. Install package dependencies using requirements.txt (may take a few minutes). This may require using a command that looks like this:
pip install -r requirements.txt
  • If there are any problem in installing packages, please try directly using pip install, e.g., "pip install streamlit"
  1. Run Streamlit on the StarGazer Python script using the following line of code:
streamlit run StarGazer.py

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.