Hi @cafletezbrant,

I recently encountered an error message when trying to run flowClean::clean() on a public dataset.
The error message was : Error in if (!is.na(shifts)) { : the condition has length > 1

I found out that this error was due to an if statement in flowClean:::fix.weird(), while shifts was of dimension > 1

if (!is.na()(shifts))

On a local copy of this function, I replaced this statement by the following :

if (length(shifts[!is.na(shifts)]) > 0)

And this seems to solve my error.

How can I best proceed with this probable bug fix ?
Do you want me to raise a pull request on flowClean repo ?

Thanks,

Philippe

Hi,
Description is being depreciated in flowCore. I tried to fork it and fix it myself, but I then kept getting "Less than ", nstable," populations identified by flowClean" warnings, so I obviously misunderstood how something worked (nstable would actually say 5 in my case).
Chris

Hi,
When there are too few cells or no time parameter, a flow frame is return even if a returnVector is TRUE.
Could you check the pull request I submit to my fork?
SamGG#1
SamGG@72349cf
Best.

The package is completely out of sync with Bioconductor and the most recent updates and bug fixes are missing from the official/latest versions on Bioconductor. Could you you please update your package on Bioconductor, ideally in release and devel.