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toad's Introduction

TOAD
(Toolkit for Analysis in Diffusion MRI)

Organization: Unité Fonctionnelle de Neuroimagerie (UNF), Centre de recherche de l’institut Universitaire de Gériatrie de Montréal (CRIUGM)

Maintainer: Arnaud Boré and Christophe Bedetti

Warning: the project is under active development and should not be used to process real data at this time.


TOAD aims to offer an automated pipeline to process diffusion neuroimaging data. The toolkit uses a large combination of tools (Matlab, FreeSurfer, FSL, Mrtrix) to clean the data, compute different masks, segment maps and then compute fibers, tensors and their associated metrics such as Fractional Anisotropy (FA) and so on.

The project just started and is under active development. You can find some documentation on how to contribute in the doc folder.


TOAD vise à offrir une chaine de traitement semi-automatisée pour analyser les données de neuro-imagerie de diffusion. La boite à outils qu’est TOAD utilise de nombreux logiciels (Matlab, FreeSurfer, FSL, Mrtrix) pour corriger, débruiter et reconstruire les tenseurs et extraire les principales métriques associées (MD, FA...) ainsi que pour produire les faisceaux de connectivité à partir des données de diffusion.

Le projet vient juste de démarrer et est toujours en cours de développement. Vous pouvez trouver davantage d’informations sur TOAD et sur comment contribuer dans le dossier “doc”.

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